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THBS3 thrombospondin 3 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120317128, updated on 21-Mar-2024

Summary

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Gene symbol
THBS3
Gene description
thrombospondin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See THBS3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024097591.1 (1845969..1863495)

NW_024097591.1Genomic Context describing neighboring genes Neighboring gene lysosomal acid glucosylceramidase-like Neighboring gene metaxin 1 Neighboring gene mucin 1, cell surface associated Neighboring gene tripartite motif containing 46

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024097591 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024097591.1 Reference ASM1654583v1

    Range
    1845969..1863495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039363462.1 → XP_039219396.1  thrombospondin-3

    Conserved Domains (11) summary
    cd00054
    Location:327 → 361
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00001
    Location:539 → 561
    TSP3; TSP3 repeat_short [structural motif]
    sd00002
    Location:562 → 597
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:468 → 502
    TSP3_1C; TSP3 repeat_1C [structural motif]
    cd16076
    Location:238 → 280
    TSPcc; coiled coil [structural motif]
    pfam02412
    Location:562 → 597
    TSP_3; Thrombospondin type 3 repeat
    NF000535
    Location:473 → 663
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    pfam05735
    Location:752 → 949
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:385 → 416
    EGF_3; EGF domain
    cl13107
    Location:238 → 280
    TSPcc; Coiled coil region of thrombospondin
    cl22861
    Location:35 → 204
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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