U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120314888 toll-like receptor 2 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120314888, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120314888
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120314888 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024097333.1 (135166..163237)

NW_024097333.1Genomic Context describing neighboring genes Neighboring gene glycosylated lysosomal membrane protein Neighboring gene uncharacterized LOC120314952 Neighboring gene ras-related and estrogen-regulated growth inhibitor-like protein Neighboring gene integrin subunit alpha 10 Neighboring gene ring finger protein 115 Neighboring gene RNA polymerase III subunit C

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024097333 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024097333.1 Reference ASM1654583v1

    Range
    135166..163237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039358429.1 → XP_039214363.1  toll-like receptor 2

    Conserved Domains (5) summary
    smart00255
    Location:653 → 790
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:53 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    COG4886
    Location:51 → 157
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:55 → 78
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:178 → 202
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_039358430.1 → XP_039214364.1  toll-like receptor 2

    Conserved Domains (5) summary
    smart00255
    Location:653 → 790
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:53 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    COG4886
    Location:51 → 157
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:55 → 78
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:178 → 202
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_039358431.1 → XP_039214365.1  toll-like receptor 2

    Conserved Domains (5) summary
    smart00255
    Location:653 → 790
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:53 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    COG4886
    Location:51 → 157
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:55 → 78
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:178 → 202
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_039358432.1 → XP_039214366.1  toll-like receptor 2

    Conserved Domains (5) summary
    smart00255
    Location:653 → 790
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:53 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    COG4886
    Location:51 → 157
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:55 → 78
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:178 → 202
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_005558560.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.