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COL9A3 collagen type IX alpha 3 chain [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120314758, updated on 21-Mar-2024

Summary

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Gene symbol
COL9A3
Gene description
collagen type IX alpha 3 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See COL9A3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024097319.1 (2692344..2782676, complement)

NW_024097319.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120314751 Neighboring gene death inducer-obliterator 1 Neighboring gene transcription factor like 5 Neighboring gene MRG domain binding protein Neighboring gene neurotensin receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024097319 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables opioid growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-3(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024097319.1 Reference ASM1654583v1

    Range
    2692344..2782676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039358183.1 → XP_039214117.1  collagen alpha-3(IX) chain isoform X1

    Conserved Domains (2) summary
    pfam01391
    Location:507 → 561
    Collagen; Collagen triple helix repeat (20 copies)
    pfam04664
    Location:120 → 188
    OGFr_N; Opioid growth factor receptor (OGFr) conserved region

  2. XM_039358186.1 → XP_039214120.1  collagen alpha-3(IX) chain isoform X4

    Conserved Domains (1) summary
    pfam01391
    Location:341 → 395
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_039358185.1 → XP_039214119.1  collagen alpha-3(IX) chain isoform X3

    Conserved Domains (1) summary
    pfam04664
    Location:120 → 324
    OGFr_N; Opioid growth factor receptor (OGFr) conserved region

  4. XM_039358184.1 → XP_039214118.1  collagen alpha-3(IX) chain isoform X2

    Conserved Domains (1) summary
    pfam04664
    Location:120 → 326
    OGFr_N; Opioid growth factor receptor (OGFr) conserved region
Nucleotide Protein
Heading Accession and Version

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