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JUP junction plakoglobin [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120312811, updated on 21-Mar-2024

Summary

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Gene symbol
JUP
Gene description
junction plakoglobin
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See JUP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024097068.1 (1457029..1537481)

NW_024097068.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 1 Neighboring gene prolyl 3-hydroxylase family member 4 (inactive) Neighboring gene uncharacterized LOC120312816 Neighboring gene insulinoma-associated protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024097068 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
junction plakoglobin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024097068.1 Reference ASM1654583v1

    Range
    1457029..1537481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039354012.1 → XP_039209946.1  junction plakoglobin

    Conserved Domains (4) summary
    smart00185
    Location:385 → 425
    ARM; Armadillo/beta-catenin-like repeats
    COG5064
    Location:110 → 508
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:437 → 462
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:617 → 656
    Arm; Armadillo/beta-catenin-like repeat

  2. XM_039354014.1 → XP_039209948.1  junction plakoglobin

    Conserved Domains (4) summary
    smart00185
    Location:385 → 425
    ARM; Armadillo/beta-catenin-like repeats
    COG5064
    Location:110 → 508
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:437 → 462
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:617 → 656
    Arm; Armadillo/beta-catenin-like repeat

  3. XM_039354013.1 → XP_039209947.1  junction plakoglobin

    Conserved Domains (4) summary
    smart00185
    Location:385 → 425
    ARM; Armadillo/beta-catenin-like repeats
    COG5064
    Location:110 → 508
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:437 → 462
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:617 → 656
    Arm; Armadillo/beta-catenin-like repeat
Nucleotide Protein
Heading Accession and Version

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