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SDC1 syndecan 1 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120311392, updated on 21-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024096962.1 (236109..268448)

NW_024096962.1Genomic Context describing neighboring genes Neighboring gene b(0,+)-type amino acid transporter 1-like Neighboring gene pumilio homolog 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024096962 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024096962.1 Reference ASM1654583v1

    Range
    236109..268448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039350826.1 → XP_039206760.1  syndecan-1

    Conserved Domains (1) summary
    pfam01034
    Location:262 → 324
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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