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COL9A1 collagen type IX alpha 1 chain [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120309453, updated on 21-Mar-2024

Summary

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Gene symbol
COL9A1
Gene description
collagen type IX alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See COL9A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024096778.1 (2675019..2770015)

NW_024096778.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase complex assembly factor 4 Neighboring gene family with sequence similarity 135 member A Neighboring gene collagen type XIX alpha 1 chain Neighboring gene LMBR1 domain containing 1 Neighboring gene small Cajal body-specific RNA 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024096778 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024096778.1 Reference ASM1654583v1

    Range
    2675019..2770015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039346720.1 → XP_039202654.1  collagen alpha-1(IX) chain

    Conserved Domains (3) summary
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains
    pfam01391
    Location:487 → 541
    Collagen; Collagen triple helix repeat (20 copies)
    cl11081
    Location:507 → 752
    dermokine
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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