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UBXN2B UBX domain protein 2B [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120309398, updated on 21-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024096777.1 (248280..299761)

NW_024096777.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 110 member B Neighboring gene uncharacterized LOC120309395 Neighboring gene cytochrome P450 7A1 Neighboring gene syndecan binding protein Neighboring gene neutral sphingomyelinase activation associated factor Neighboring gene thymocyte selection associated high mobility group box

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024096777 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024096777.1 Reference ASM1654583v1

    Range
    248280..299761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039346577.1 → XP_039202511.1  UBX domain-containing protein 2B isoform X2

    Conserved Domains (3) summary
    smart00553
    Location:178 → 270
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    PHA03253
    Location:27 → 123
    PHA03253; UL35; Provisional
    cl28922
    Location:288 → 316
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_039346576.1 → XP_039202510.1  UBX domain-containing protein 2B isoform X1

    Conserved Domains (3) summary
    smart00553
    Location:178 → 270
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    PHA03253
    Location:34 → 123
    PHA03253; UL35; Provisional
    cl28922
    Location:288 → 369
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

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