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TPM1 tropomyosin 1 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120306573, updated on 21-Mar-2024

Summary

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Gene symbol
TPM1
Gene description
tropomyosin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See TPM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024096608.1 (908834..929456, complement)

NW_024096608.1Genomic Context describing neighboring genes Neighboring gene RAB8B, member RAS oncogene family Neighboring gene lactamase beta Neighboring gene talin 2 Neighboring gene C2 calcium-dependent domain-containing protein 4C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024096608 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomyosin alpha-1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024096608.1 Reference ASM1654583v1

    Range
    908834..929456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039340061.1 → XP_039195995.1  tropomyosin alpha-1 chain isoform X9

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  2. XM_039340069.1 → XP_039196003.1  tropomyosin alpha-1 chain isoform X16

    Conserved Domains (1) summary
    pfam00261
    Location:13 → 247
    Tropomyosin

  3. XM_039340062.1 → XP_039195996.1  tropomyosin alpha-1 chain isoform X10

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  4. XM_039340071.1 → XP_039196005.1  tropomyosin alpha-1 chain isoform X18

    Conserved Domains (2) summary
    PRK09039
    Location:15 → 133
    PRK09039; peptidoglycan -binding protein
    pfam00261
    Location:90 → 324
    Tropomyosin

  5. XM_039340059.1 → XP_039195993.1  tropomyosin alpha-1 chain isoform X7

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  6. XM_039340063.1 → XP_039195997.1  tropomyosin alpha-1 chain isoform X11

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  7. XM_039340070.1 → XP_039196004.1  tropomyosin alpha-1 chain isoform X17

    Conserved Domains (1) summary
    pfam00261
    Location:13 → 247
    Tropomyosin

  8. XM_039340053.1 → XP_039195987.1  tropomyosin alpha-1 chain isoform X2

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 258
    Tropomyosin

  9. XM_039340054.1 → XP_039195988.1  tropomyosin alpha-1 chain isoform X3

    Conserved Domains (2) summary
    pfam00261
    Location:48 → 258
    Tropomyosin
    pfam16526
    Location:13 → 72
    CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels

  10. XM_039340052.1 → XP_039195986.1  tropomyosin alpha-1 chain isoform X1

    Conserved Domains (2) summary
    pfam00261
    Location:48 → 258
    Tropomyosin
    pfam16526
    Location:13 → 72
    CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels

  11. XM_039340065.1 → XP_039195999.1  tropomyosin alpha-1 chain isoform X13

    Conserved Domains (1) summary
    pfam00261
    Location:13 → 223
    Tropomyosin

  12. XM_039340064.1 → XP_039195998.1  tropomyosin alpha-1 chain isoform X12

    Conserved Domains (1) summary
    pfam00261
    Location:13 → 223
    Tropomyosin

  13. XM_039340056.1 → XP_039195990.1  tropomyosin alpha-1 chain isoform X5

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  14. XM_039340055.1 → XP_039195989.1  tropomyosin alpha-1 chain isoform X4

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  15. XM_039340067.1 → XP_039196001.1  tropomyosin alpha-1 chain isoform X15

    Conserved Domains (1) summary
    pfam00261
    Location:13 → 247
    Tropomyosin

  16. XM_039340058.1 → XP_039195992.1  tropomyosin alpha-1 chain isoform X6

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  17. XM_039340060.1 → XP_039195994.1  tropomyosin alpha-1 chain isoform X8

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  18. XM_039340066.1 → XP_039196000.1  tropomyosin alpha-1 chain isoform X14

    Conserved Domains (1) summary
    pfam00261
    Location:13 → 247
    Tropomyosin
Nucleotide Protein
Heading Accession and Version

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