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LOC120304932 collagen alpha-6(VI) chain-like [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120304932, updated on 5-Jun-2021

Summary

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Gene symbol
LOC120304932
Gene description
collagen alpha-6(VI) chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
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Genomic context

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See LOC120304932 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024096551.1 (3681499..3745745, complement)

NW_024096551.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene collagen alpha-6(VI) chain-like Neighboring gene collagen alpha-6(VI) chain-like Neighboring gene calpain 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024096551 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-6(VI) chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024096551.1 Reference ASM1654583v1

    Range
    3681499..3745745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039336063.1 → XP_039191997.1  collagen alpha-6(VI) chain-like

    Conserved Domains (4) summary
    cd01450
    Location:1987 → 2165
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00092
    Location:835 → 1007
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1553 → 1610
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:645 → 828
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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