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DYSF dysferlin [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120303900, updated on 21-Mar-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
59
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100685.1 (529051..684097)

NW_024100685.1Genomic Context describing neighboring genes Neighboring gene poly(A) binding protein interacting protein 2B Neighboring gene zinc finger protein 638 Neighboring gene cytochrome P450 26B1 Neighboring gene exocyst complex component 6B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100685 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100685.1 Reference ASM1654583v1

    Range
    529051..684097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039333809.1 → XP_039189743.1  dysferlin isoform X2

    Conserved Domains (12) summary
    cd04011
    Location:211 → 320
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1146 → 1274
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:374 → 548
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1606 → 1729
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1840 → 1971
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:869 → 927
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:780 → 853
    FerB; FerB (NUC096) domain
    pfam08151
    Location:318 → 368
    FerI; FerI (NUC094) domain
    pfam08165
    Location:692 → 749
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1981 → 2092
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1355 → 1425
    C2; C2 domain

  2. XM_039333817.1 → XP_039189751.1  dysferlin isoform X9

    Conserved Domains (12) summary
    cd04011
    Location:211 → 320
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1146 → 1274
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:374 → 548
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1571 → 1694
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1805 → 1936
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:869 → 927
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:780 → 853
    FerB; FerB (NUC096) domain
    pfam08151
    Location:318 → 368
    FerI; FerI (NUC094) domain
    pfam08165
    Location:692 → 749
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1946 → 2057
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1341 → 1411
    C2; C2 domain

  3. XM_039333818.1 → XP_039189752.1  dysferlin isoform X10

    Conserved Domains (12) summary
    cd04011
    Location:211 → 320
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1132 → 1260
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:374 → 534
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1557 → 1680
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1791 → 1922
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:855 → 913
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:766 → 839
    FerB; FerB (NUC096) domain
    pfam08151
    Location:318 → 368
    FerI; FerI (NUC094) domain
    pfam08165
    Location:678 → 735
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1932 → 2043
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1327 → 1397
    C2; C2 domain

  4. XM_039333812.1 → XP_039189746.1  dysferlin isoform X5

    Conserved Domains (12) summary
    cd04011
    Location:211 → 320
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1146 → 1274
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:374 → 548
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1592 → 1715
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1826 → 1957
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:869 → 927
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:780 → 853
    FerB; FerB (NUC096) domain
    pfam08151
    Location:318 → 368
    FerI; FerI (NUC094) domain
    pfam08165
    Location:692 → 749
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1967 → 2078
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1341 → 1411
    C2; C2 domain

  5. XM_039333816.1 → XP_039189750.1  dysferlin isoform X8

    Conserved Domains (12) summary
    cd04011
    Location:211 → 320
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1132 → 1260
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:374 → 534
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1578 → 1701
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1812 → 1943
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:855 → 913
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:766 → 839
    FerB; FerB (NUC096) domain
    pfam08151
    Location:318 → 368
    FerI; FerI (NUC094) domain
    pfam08165
    Location:678 → 735
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1953 → 2064
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1327 → 1397
    C2; C2 domain

  6. XM_039333808.1 → XP_039189742.1  dysferlin isoform X1

    Conserved Domains (12) summary
    cd04011
    Location:213 → 322
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1148 → 1276
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:376 → 550
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1608 → 1731
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:21 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1842 → 1973
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:871 → 929
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:782 → 855
    FerB; FerB (NUC096) domain
    pfam08151
    Location:320 → 370
    FerI; FerI (NUC094) domain
    pfam08165
    Location:694 → 751
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1983 → 2094
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1357 → 1427
    C2; C2 domain

  7. XM_039333813.1 → XP_039189747.1  dysferlin isoform X6

    Conserved Domains (12) summary
    cd04011
    Location:213 → 322
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1148 → 1276
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:376 → 550
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1587 → 1710
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:21 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1821 → 1952
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:871 → 929
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:782 → 855
    FerB; FerB (NUC096) domain
    pfam08151
    Location:320 → 370
    FerI; FerI (NUC094) domain
    pfam08165
    Location:694 → 751
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1962 → 2073
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1357 → 1427
    C2; C2 domain

  8. XM_039333810.1 → XP_039189744.1  dysferlin isoform X3

    Conserved Domains (12) summary
    cd04011
    Location:213 → 322
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1148 → 1276
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:376 → 550
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1594 → 1717
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:21 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1828 → 1959
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:871 → 929
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:782 → 855
    FerB; FerB (NUC096) domain
    pfam08151
    Location:320 → 370
    FerI; FerI (NUC094) domain
    pfam08165
    Location:694 → 751
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1969 → 2080
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1343 → 1413
    C2; C2 domain

  9. XM_039333811.1 → XP_039189745.1  dysferlin isoform X4

    Conserved Domains (12) summary
    cd04011
    Location:213 → 322
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1134 → 1262
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:376 → 536
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1594 → 1717
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:21 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1828 → 1959
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:857 → 915
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:768 → 841
    FerB; FerB (NUC096) domain
    pfam08151
    Location:320 → 370
    FerI; FerI (NUC094) domain
    pfam08165
    Location:680 → 737
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1969 → 2080
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1343 → 1413
    C2; C2 domain

  10. XM_039333814.1 → XP_039189748.1  dysferlin isoform X7

    Conserved Domains (12) summary
    cd04011
    Location:213 → 322
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1134 → 1262
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:376 → 536
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1580 → 1703
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:21 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1814 → 1945
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:857 → 915
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:768 → 841
    FerB; FerB (NUC096) domain
    pfam08151
    Location:320 → 370
    FerI; FerI (NUC094) domain
    pfam08165
    Location:680 → 737
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1955 → 2066
    Ferlin_C; Ferlin C-terminus
    cl14603
    Location:1329 → 1399
    C2; C2 domain

RNA

  1. XR_005555553.1 RNA Sequence

Nucleotide Protein
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