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DSG2 desmoglein 2 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120303776, updated on 21-Mar-2024

Summary

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Gene symbol
DSG2
Gene description
desmoglein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See DSG2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100678.1 (4987725..5020785, complement)

NW_024100678.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 6 Neighboring gene transthyretin Neighboring gene uncharacterized LOC120303815 Neighboring gene desmoglein-1-alpha-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100678 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in desmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
desmoglein-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100678.1 Reference ASM1654583v1

    Range
    4987725..5020785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039333545.1 → XP_039189479.1  desmoglein-2

    Conserved Domains (2) summary
    cd11304
    Location:162 → 266
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:751 → 842
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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