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SGCA sarcoglycan alpha [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120303487, updated on 21-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100643.1 (5098917..5147818)

NW_024100643.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene uncharacterized LOC120303503 Neighboring gene uncharacterized LOC120303490 Neighboring gene histone H1.1-like Neighboring gene histone H1.2-like Neighboring gene collagen type I alpha 1 chain Neighboring gene MAGUK p55 scaffold protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100643 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100643.1 Reference ASM1654583v1

    Range
    5098917..5147818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039333078.1 → XP_039189012.1  alpha-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam05510
    Location:12 → 300
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_039333079.1 → XP_039189013.1  alpha-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam05510
    Location:12 → 300
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_039333076.1 → XP_039189010.1  alpha-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam05510
    Location:12 → 354
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  4. XM_039333077.1 → XP_039189011.1  alpha-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam05510
    Location:63 → 277
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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