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LONRF1 LON peptidase N-terminal domain and ring finger 1 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120302557, updated on 21-Mar-2024

Summary

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Gene symbol
LONRF1
Gene description
LON peptidase N-terminal domain and ring finger 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See LONRF1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100602.1 (321571..342543, complement)

NW_024100602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120302555 Neighboring gene multifunctional protein ADE2 Neighboring gene phosphoribosyl pyrophosphate amidotransferase Neighboring gene cartilage acidic protein 1-like Neighboring gene golgin A7 family member B Neighboring gene zinc finger FYVE-type containing 27

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100602 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LON peptidase N-terminal domain and RING finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100602.1 Reference ASM1654583v1

    Range
    321571..342543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039331136.1 → XP_039187070.1  LON peptidase N-terminal domain and RING finger protein 1

    Conserved Domains (8) summary
    COG5574
    Location:199 → 374
    PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:97 → 124
    TPR; TPR repeat [structural motif]
    cd00162
    Location:34 → 69
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cd16514
    Location:333 → 374
    RING2-HC_LONFs; RING finger 2, HC subclass, found in the LON peptidase N-terminal domain and RING finger proteins family
    pfam02190
    Location:424 → 622
    LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain
    pfam10414
    Location:82 → 123
    CysG_dimerizer; Sirohaem synthase dimerization region
    pfam14559
    Location:106 → 167
    TPR_19; Tetratricopeptide repeat
    cl17238
    Location:34 → 70
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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