U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HCFC1 host cell factor C1 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120301417, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100553.1 (4298054..4322490, complement)

NW_024100553.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene ras-related protein Rab-7a-like Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024100553 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100553.1 Reference ASM1654583v1

    Range
    4298054..4322490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039328641.1 → XP_039184575.1  host cell factor 1 isoform X3

    Conserved Domains (6) summary
    PLN02193
    Location:27 → 173
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:1369 → 1613
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1900 → 1929
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:101 → 154
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:165 → 231
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:220 → 252
    Kelch_5; Kelch motif

  2. XM_039328640.1 → XP_039184574.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PLN02193
    Location:34 → 329
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:1474 → 1718
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:2005 → 2034
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:207 → 260
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:326 → 358
    Kelch_5; Kelch motif

  3. XM_039328639.1 → XP_039184573.1  host cell factor 1 isoform X1

    Conserved Domains (5) summary
    PLN02193
    Location:34 → 329
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:1475 → 1719
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:2006 → 2035
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:207 → 260
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:326 → 358
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.