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CAPN3 calpain 3 [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120300708, updated on 21-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024096464.1 (663259..692794)

NW_024096464.1Genomic Context describing neighboring genes Neighboring gene VPS39 subunit of HOPS complex Neighboring gene transmembrane protein 87A Neighboring gene glucosidase alpha, neutral C Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23 Neighboring gene leucine rich repeat containing 57

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024096464 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024096464.1 Reference ASM1654583v1

    Range
    663259..692794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039327094.1 → XP_039183028.1  calpain-3 isoform X1

    Conserved Domains (4) summary
    cd16190
    Location:635 → 803
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:69 → 405
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:426 → 564
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:573 → 635
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_039327184.1 → XP_039183118.1  calpain-3 isoform X2

    Conserved Domains (3) summary
    cd16190
    Location:597 → 765
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:69 → 405
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:426 → 564
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
Heading Accession and Version

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