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COL6A1 collagen type VI alpha 1 chain [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120300380, updated on 21-Mar-2024

Summary

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Gene symbol
COL6A1
Gene description
collagen type VI alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See COL6A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100510.1 (1945411..2021097)

NW_024100510.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120300367 Neighboring gene poly(rC) binding protein 3 Neighboring gene collagen type VI alpha 2 chain Neighboring gene formimidoyltransferase cyclodeaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100510 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100510.1 Reference ASM1654583v1

    Range
    1945411..2021097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039326317.1 → XP_039182251.1  collagen alpha-1(VI) chain

    Conserved Domains (3) summary
    cd01480
    Location:38 → 232
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam01391
    Location:433 → 488
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:815 → 994
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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