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COL6A3 collagen type VI alpha 3 chain [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120300364, updated on 21-Mar-2024

Summary

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Gene symbol
COL6A3
Gene description
collagen type VI alpha 3 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
Orthologs
human mouse all
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Genomic context

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See COL6A3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
46
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100510.1 (1442175..1676033, complement)

NW_024100510.1Genomic Context describing neighboring genes Neighboring gene atypical chemokine receptor 3 Neighboring gene COP9 signalosome subunit 8 Neighboring gene uncharacterized LOC120300367 Neighboring gene melanophilin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100510 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-3(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100510.1 Reference ASM1654583v1

    Range
    1442175..1676033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039326289.1 → XP_039182223.1  collagen alpha-3(VI) chain isoform X1

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2684 → 2736
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_039326299.1 → XP_039182233.1  collagen alpha-3(VI) chain isoform X11

    Conserved Domains (6) summary
    smart00327
    Location:1223 → 1391
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2263 → 2331
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2483 → 2535
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:2006 → 2193
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1696 → 1751
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_039326291.1 → XP_039182225.1  collagen alpha-3(VI) chain isoform X3

    Conserved Domains (6) summary
    smart00327
    Location:1423 → 1591
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2463 → 2531
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2683 → 2735
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1224 → 1396
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1896 → 1951
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_039326295.1 → XP_039182229.1  collagen alpha-3(VI) chain isoform X7

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2610 → 2662
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_039326294.1 → XP_039182228.1  collagen alpha-3(VI) chain isoform X6

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2638 → 2690
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  6. XM_039326293.1 → XP_039182227.1  collagen alpha-3(VI) chain isoform X5

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2654 → 2706
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  7. XM_039326290.1 → XP_039182224.1  collagen alpha-3(VI) chain isoform X2

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2683 → 2735
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  8. XM_039326292.1 → XP_039182226.1  collagen alpha-3(VI) chain isoform X4

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2655 → 2707
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  9. XM_039326288.1 → XP_039182222.1  collagen alpha-3(VI) chain isoform X1

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2684 → 2736
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  10. XM_039326298.1 → XP_039182232.1  collagen alpha-3(VI) chain isoform X10

    Conserved Domains (6) summary
    smart00327
    Location:1224 → 1392
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2264 → 2332
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2484 → 2536
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1025 → 1197
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1697 → 1752
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:37 → 201
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  11. XM_039326297.1 → XP_039182231.1  collagen alpha-3(VI) chain isoform X9

    Conserved Domains (6) summary
    smart00327
    Location:1225 → 1393
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2265 → 2333
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2485 → 2537
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1026 → 1198
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1698 → 1753
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  12. XM_039326296.1 → XP_039182230.1  collagen alpha-3(VI) chain isoform X8

    Conserved Domains (6) summary
    smart00327
    Location:1424 → 1592
    VWA; von Willebrand factor (vWF) type A domain
    cd00063
    Location:2464 → 2532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00014
    Location:2581 → 2633
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam00092
    Location:1225 → 1397
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1897 → 1952
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:237 → 401
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
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