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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Hyaena hyaena (striped hyena) ]

Gene ID: 120246658, updated on 21-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Hyaena hyaena
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM300989v1 (GCF_003009895.1) Unplaced Scaffold NW_024081110.1 (739292..808341, complement)

NW_024081110.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120246661 Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene elongation factor 1-alpha 1-like Neighboring gene small nucleolar RNA SNORA72

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024081110 Unplaced Scaffold Reference ASM300989v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hyaena hyaena Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM300989v1 Primary Assembly

Genomic

  1. NW_024081110.1 Reference ASM300989v1 Primary Assembly

    Range
    739292..808341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039254282.1 → XP_039110213.1  protein O-mannosyl-transferase TMTC4 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:452 → 739
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:482 → 510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:294 → 366
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_039254284.1 → XP_039110215.1  protein O-mannosyl-transferase TMTC4 isoform X3

    Conserved Domains (3) summary
    COG0457
    Location:463 → 628
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:510 → 536
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:294 → 366
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_039254281.1 → XP_039110212.1  protein O-mannosyl-transferase TMTC4 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:452 → 739
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:482 → 510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:294 → 366
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_039254283.1 → XP_039110214.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:375 → 662
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:405 → 433
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:217 → 289
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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