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CHIT1 chitinase 1 [ Hyaena hyaena (striped hyena) ]

Gene ID: 120228960, updated on 21-Mar-2024

Summary

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Gene symbol
CHIT1
Gene description
chitinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Hyaena hyaena
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena
Orthologs
human mouse all
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Genomic context

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See CHIT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM300989v1 (GCF_003009895.1) Unplaced Scaffold NW_024080660.1 (3206155..3219177, complement)

NW_024080660.1Genomic Context describing neighboring genes Neighboring gene myosin binding protein H Neighboring gene chitinase 3 like 1 Neighboring gene etoposide-induced protein 2.4 homolog Neighboring gene BTG anti-proliferation factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024080660 Unplaced Scaffold Reference ASM300989v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitotriosidase-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hyaena hyaena Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM300989v1 Primary Assembly

Genomic

  1. NW_024080660.1 Reference ASM300989v1 Primary Assembly

    Range
    3206155..3219177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039227642.1 → XP_039083573.1  chitotriosidase-1

    Conserved Domains (2) summary
    cd02872
    Location:24 → 381
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:416 → 463
    ChtBD2; Chitin-binding domain type 2
Nucleotide Protein
Heading Accession and Version

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