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CNTN6 contactin 6 [ Hyaena hyaena (striped hyena) ]

Gene ID: 120222170, updated on 21-Mar-2024

Summary

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Gene symbol
CNTN6
Gene description
contactin 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Hyaena hyaena
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena
Orthologs
human mouse all
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Genomic context

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See CNTN6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM300989v1 (GCF_003009895.1) Unplaced Scaffold NW_024081477.1 (531242..704145, complement)

NW_024081477.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120222169 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene integrin beta-1-binding protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024081477 Unplaced Scaffold Reference ASM300989v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hyaena hyaena Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM300989v1 Primary Assembly

Genomic

  1. NW_024081477.1 Reference ASM300989v1 Primary Assembly

    Range
    531242..704145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039219879.1 → XP_039075810.1  contactin-6 isoform X3

    Conserved Domains (4) summary
    smart00060
    Location:727 → 807
    FN3; Fibronectin type 3 domain
    cd00063
    Location:422 → 515
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:143 → 146
    Ig; Ig strand A [structural motif]
    cl11960
    Location:143 → 227
    Ig; Immunoglobulin domain

  2. XM_039219880.1 → XP_039075811.1  contactin-6 isoform X4

    Conserved Domains (4) summary
    smart00060
    Location:646 → 726
    FN3; Fibronectin type 3 domain
    cd00063
    Location:341 → 434
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:250 → 255
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:243 → 341
    Ig; Immunoglobulin domain

  3. XM_039219878.1 → XP_039075809.1  contactin-6 isoform X2

    Conserved Domains (5) summary
    smart00060
    Location:795 → 875
    FN3; Fibronectin type 3 domain
    cd00063
    Location:490 → 583
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:211 → 214
    Ig; Ig strand A [structural motif]
    cd04969
    Location:300 → 388
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:211 → 295
    Ig; Immunoglobulin domain

  4. XM_039219877.1 → XP_039075808.1  contactin-6 isoform X1

    Conserved Domains (5) summary
    smart00060
    Location:831 → 911
    FN3; Fibronectin type 3 domain
    cd00063
    Location:526 → 619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:247 → 250
    Ig; Ig strand A [structural motif]
    cd04969
    Location:336 → 424
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:247 → 331
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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