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LOC120208328 carboxyl-terminal-processing peptidase 2, chloroplastic-like [ Hibiscus syriacus ]

Gene ID: 120208328, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120208328
Gene description
carboxyl-terminal-processing peptidase 2, chloroplastic-like
Locus tag
F3Y22_tig00016212pilonHSYRG00117
Gene type
protein coding
RefSeq status
MODEL
Organism
Hibiscus syriacus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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Genomic context

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See LOC120208328 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024062384.1 (983182..987104)

NW_024062384.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene DEAD-box ATP-dependent RNA helicase 13-like Neighboring gene DEAD-box ATP-dependent RNA helicase 13-like Neighboring gene carboxyl-terminal-processing peptidase 2, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024062384 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 2, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM638163v2 Primary Assembly

Genomic

  1. NW_024062384.1 Reference ASM638163v2 Primary Assembly

    Range
    983182..987104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039207627.1 → XP_039063558.1  carboxyl-terminal-processing peptidase 2, chloroplastic-like

    UniProtKB/TrEMBL
    A0A6A3C154
    Conserved Domains (1) summary
    PLN00049
    Location:157 → 545
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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