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LOC120205994 sulfoquinovosyl transferase SQD2-like [ Hibiscus syriacus ]

Gene ID: 120205994, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120205994
Gene description
sulfoquinovosyl transferase SQD2-like
Locus tag
F3Y22_tig00000453pilonHSYRG00005
Gene type
protein coding
RefSeq status
MODEL
Organism
Hibiscus syriacus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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Genomic context

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See LOC120205994 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024061788.1 (18946..22426)

NW_024061788.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein GAI-ASSOCIATED FACTOR 1-like Neighboring gene arabinosyltransferase RRA3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024061788 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2-like
Names
Sulfoquinovosyl transferase SQD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM638163v2 Primary Assembly

Genomic

  1. NW_024061788.1 Reference ASM638163v2 Primary Assembly

    Range
    18946..22426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039205747.1 → XP_039061678.1  sulfoquinovosyl transferase SQD2-like isoform X1

    Conserved Domains (1) summary
    PLN02871
    Location:48 → 242
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  2. XM_039205752.1 → XP_039061683.1  sulfoquinovosyl transferase SQD2-like isoform X2

    Conserved Domains (2) summary
    PLN02871
    Location:48 → 234
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
    pfam05493
    Location:234 → 249
    ATP_synt_H; ATP synthase subunit H
Nucleotide Protein
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