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LOC120182630 uncharacterized LOC120182630 [ Hibiscus syriacus ]

Gene ID: 120182630, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120182630
Gene description
uncharacterized LOC120182630
Locus tag
F3Y22_tig00112699pilonHSYRG00016
Gene type
protein coding
RefSeq status
MODEL
Organism
Hibiscus syriacus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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Genomic context

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See LOC120182630 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063387.1 (117880..120209)

NW_024063387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120182627 Neighboring gene BTB/POZ domain-containing protein At1g67900-like Neighboring gene uncharacterized LOC120182619 Neighboring gene probable E3 ubiquitin-protein ligase XERICO Neighboring gene uncharacterized LOC120182633

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024063387 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC120182630

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM638163v2 Primary Assembly

Genomic

  1. NW_024063387.1 Reference ASM638163v2 Primary Assembly

    Range
    117880..120209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039187554.1 → XP_039043485.1  uncharacterized protein LOC120182630

    UniProtKB/TrEMBL
    A0A6A3BMC8
    Conserved Domains (1) summary
    pfam04724
    Location:42 → 389
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
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