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LOC120161373 UDP-arabinopyranose mutase 1-like [ Hibiscus syriacus ]

Gene ID: 120161373, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120161373
Gene description
UDP-arabinopyranose mutase 1-like
Locus tag
F3Y22_tig00111398pilonHSYRG00409
Gene type
protein coding
RefSeq status
MODEL
Organism
Hibiscus syriacus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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Genomic context

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See LOC120161373 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063081.1 (2422452..2438600)

NW_024063081.1Genomic Context describing neighboring genes Neighboring gene 4-hydroxyphenylpyruvate dioxygenase-like Neighboring gene transcription factor JUNGBRUNNEN 1-like Neighboring gene cytochrome P450 85A-like Neighboring gene transcription factor MYB59-like Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024063081 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 1-like
Names
UDP-arabinopyranose mutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM638163v2 Primary Assembly

Genomic

  1. NW_024063081.1 Reference ASM638163v2 Primary Assembly

    Range
    2422452..2438600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039171652.1 → XP_039027583.1  UDP-arabinopyranose mutase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6A3A216
    Conserved Domains (1) summary
    PLN03180
    Location:16 → 354
    PLN03180; reversibly glycosylated polypeptide; Provisional

  2. XM_039171651.1 → XP_039027582.1  UDP-arabinopyranose mutase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6A3A216
    Conserved Domains (1) summary
    PLN03180
    Location:16 → 354
    PLN03180; reversibly glycosylated polypeptide; Provisional

  3. XM_039171653.1 → XP_039027584.1  UDP-arabinopyranose mutase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A6A2XVX5, A0A6A3A216
    Conserved Domains (1) summary
    PLN03180
    Location:16 → 354
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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