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LOC120133451 carboxyl-terminal-processing peptidase 1, chloroplastic-like [ Hibiscus syriacus ]

Gene ID: 120133451, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120133451
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic-like
Locus tag
F3Y22_tig00110580pilonHSYRG00132
Gene type
protein coding
RefSeq status
MODEL
Organism
Hibiscus syriacus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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Genomic context

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See LOC120133451 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024062791.1 (967823..973342)

NW_024062791.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 4-like Neighboring gene uncharacterized LOC120133444 Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like Neighboring gene 60S ribosomal protein L32-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024062791 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM638163v2 Primary Assembly

Genomic

  1. NW_024062791.1 Reference ASM638163v2 Primary Assembly

    Range
    967823..973342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039150030.1 → XP_039005961.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A6A3A4V3
    Conserved Domains (1) summary
    PLN00049
    Location:110 → 448
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_039150031.1 → XP_039005962.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like isoform X2

    Conserved Domains (1) summary
    PLN00049
    Location:1 → 297
    PLN00049; carboxyl-terminal processing protease; Provisional

  3. XM_039150032.1 → XP_039005963.1  carboxyl-terminal-processing peptidase 1, chloroplastic-like isoform X3

    Conserved Domains (1) summary
    PLN00049
    Location:5 → 277
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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