U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120106517 probable beta-1,4-xylosyltransferase IRX9H [ Phoenix dactylifera (date palm) ]

Gene ID: 120106517, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120106517
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Phoenix dactylifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120106517 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current palm_55x_up_171113_PBpolish2nd_filt_p (GCF_009389715.1) Unplaced Scaffold NW_024067961.1 (114015..123678, complement)

NW_024067961.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein 1-like Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene fatty acid amide hydrolase Neighboring gene protein transport protein SEC23-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024067961 Unplaced Scaffold Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phoenix dactylifera Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

Genomic

  1. NW_024067961.1 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Range
    114015..123678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039119450.1 → XP_038975378.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    UniProtKB/TrEMBL
    A0A8B8ZV38
    Conserved Domains (1) summary
    cd00218
    Location:163 → 394
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_039119451.1 → XP_038975379.1  probable beta-1,4-xylosyltransferase IRX9H isoform X2

    UniProtKB/TrEMBL
    A0A8B8ZVG8
    Conserved Domains (1) summary
    cd00218
    Location:163 → 360
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases