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LOC120079271 cytochrome c oxidase subunit 2-like [ Benincasa hispida (wax gourd) ]

Gene ID: 120079271, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120079271
Gene description
cytochrome c oxidase subunit 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Benincasa hispida
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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Genomic context

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See LOC120079271 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM972705v1 (GCF_009727055.1) 6 NC_052354.1 (46935908..46936810, complement)

Chromosome 6 - NC_052354.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein recA homolog 3, mitochondrial Neighboring gene putative transcription factor bHLH041 Neighboring gene cytokinin dehydrogenase 3-like Neighboring gene uncharacterized LOC120080324

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052354.1 Chromosome 6 Reference ASM972705v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytochrome-c oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP synthesis coupled electron transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c oxidase subunit 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM972705v1

Genomic

  1. NC_052354.1 Reference ASM972705v1

    Range
    46935908..46936810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039033427.1 → XP_038889355.1  cytochrome c oxidase subunit 2-like

    Conserved Domains (1) summary
    cl19115
    Location:60 → 152
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein
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