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LOC120078382 cellulose synthase-like protein D4 [ Benincasa hispida (wax gourd) ]

Gene ID: 120078382, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120078382
Gene description
cellulose synthase-like protein D4
Gene type
protein coding
RefSeq status
MODEL
Organism
Benincasa hispida
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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Genomic context

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See LOC120078382 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM972705v1 (GCF_009727055.1) 5 NC_052353.1 (51980676..51986091, complement)

Chromosome 5 - NC_052353.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120078277 Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene AT-hook motif nuclear-localized protein 25-like Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052353.1 Chromosome 5 Reference ASM972705v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM972705v1

Genomic

  1. NC_052353.1 Reference ASM972705v1

    Range
    51980676..51986091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039032648.1 → XP_038888576.1  cellulose synthase-like protein D4

    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1122
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

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