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LOC120071241 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [ Benincasa hispida (wax gourd) ]

Gene ID: 120071241, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120071241
Gene description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Benincasa hispida
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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Genomic context

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See LOC120071241 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM972705v1 (GCF_009727055.1) 2 NC_052350.1 (21774958..21778103)

Chromosome 2 - NC_052350.1Genomic Context describing neighboring genes Neighboring gene U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like Neighboring gene auxin-responsive protein IAA29-like Neighboring gene putative clathrin assembly protein At2g25430 Neighboring gene WD repeat-containing protein 11-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052350.1 Chromosome 2 Reference ASM972705v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM972705v1

Genomic

  1. NC_052350.1 Reference ASM972705v1

    Range
    21774958..21778103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039023398.1 → XP_038879326.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    Conserved Domains (1) summary
    pfam04724
    Location:11 → 360
    Glyco_transf_17; Glycosyltransferase family 17

  2. XM_039023397.1 → XP_038879325.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    Conserved Domains (1) summary
    pfam04724
    Location:11 → 360
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
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