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LOC120071011 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [ Benincasa hispida (wax gourd) ]

Gene ID: 120071011, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120071011
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Benincasa hispida
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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Genomic context

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See LOC120071011 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM972705v1 (GCF_009727055.1) 2 NC_052350.1 (7841089..7846571, complement)

Chromosome 2 - NC_052350.1Genomic Context describing neighboring genes Neighboring gene RNA-dependent RNA polymerase 2 Neighboring gene uncharacterized LOC120071012 Neighboring gene spermidine synthase 2-like Neighboring gene probable cyclic nucleotide-gated ion channel 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052350.1 Chromosome 2 Reference ASM972705v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM972705v1

Genomic

  1. NC_052350.1 Reference ASM972705v1

    Range
    7841089..7846571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039022993.1 → XP_038878921.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 isoform X1

    Conserved Domains (1) summary
    PLN02205
    Location:25 → 837
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_039022995.1 → XP_038878923.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 isoform X2

    Conserved Domains (1) summary
    PLN02205
    Location:9 → 821
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_039022994.1 → XP_038878922.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 isoform X1

    Conserved Domains (1) summary
    PLN02205
    Location:25 → 837
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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