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LOC120070964 callose synthase 10 [ Benincasa hispida (wax gourd) ]

Gene ID: 120070964, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120070964
Gene description
callose synthase 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Benincasa hispida
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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Genomic context

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See LOC120070964 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
51
Annotation release Status Assembly Chr Location
100 current ASM972705v1 (GCF_009727055.1) 2 NC_052350.1 (10331285..10406524, complement)

Chromosome 2 - NC_052350.1Genomic Context describing neighboring genes Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 Neighboring gene FBD-associated F-box protein At5g60610-like Neighboring gene probable phosphopantothenoylcysteine decarboxylase Neighboring gene adenine/guanine permease AZG2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052350.1 Chromosome 2 Reference ASM972705v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM972705v1

Genomic

  1. NC_052350.1 Reference ASM972705v1

    Range
    10331285..10406524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039022921.1 → XP_038878849.1  callose synthase 10 isoform X2

    Conserved Domains (2) summary
    pfam02364
    Location:1026 → 1764
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:348 → 458
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_039022919.1 → XP_038878847.1  callose synthase 10 isoform X1

    Conserved Domains (2) summary
    pfam02364
    Location:1029 → 1767
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:348 → 458
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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