U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120070710 callose synthase 9-like [ Benincasa hispida (wax gourd) ]

Gene ID: 120070710, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120070710
Gene description
callose synthase 9-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Benincasa hispida
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120070710 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
52
Annotation release Status Assembly Chr Location
100 current ASM972705v1 (GCF_009727055.1) 2 NC_052350.1 (44439467..44530306)

Chromosome 2 - NC_052350.1Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis regulatory protein homolog Neighboring gene callose synthase 3 Neighboring gene choline/ethanolaminephosphotransferase 1-like Neighboring gene high mobility group B protein 6-like Neighboring gene uncharacterized LOC120071146 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene uncharacterized LOC120072120

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_052350.1 Chromosome 2 Reference ASM972705v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
callose synthase 9-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM972705v1

Genomic

  1. NC_052350.1 Reference ASM972705v1

    Range
    44439467..44530306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039022559.1 → XP_038878487.1  callose synthase 9-like

    Conserved Domains (2) summary
    pfam02364
    Location:1025 → 1768
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_039022558.1 → XP_038878486.1  callose synthase 9-like

    Conserved Domains (2) summary
    pfam02364
    Location:1025 → 1768
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases