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LOC120063842 polypeptide N-acetylgalactosaminyltransferase 5-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120063842, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120063842
Gene description
polypeptide N-acetylgalactosaminyltransferase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120063842 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 19 NC_052325.1 (40146501..40155757, complement)

Chromosome 19 - NC_052325.1Genomic Context describing neighboring genes Neighboring gene activin receptor type-1C-like Neighboring gene cytohesin 1 interacting protein Neighboring gene glycerol-3-phosphate dehydrogenase, mitochondrial-like Neighboring gene nuclear receptor subfamily 4 group A member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052325.1 Chromosome 19 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052325.1 Reference SaNama_1.0 Primary Assembly

    Range
    40146501..40155757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039014157.1 → XP_038870085.1  polypeptide N-acetylgalactosaminyltransferase 5-like

    UniProtKB/TrEMBL
    A0A8U1F5T0
    Conserved Domains (2) summary
    cd02510
    Location:412 → 715
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:725 → 844
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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