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c1galt1c1 C1GALT1-specific chaperone 1 [ Salvelinus namaycush (lake trout) ]

Gene ID: 120062227, updated on 21-Mar-2024

Summary

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Gene symbol
c1galt1c1
Gene description
C1GALT1-specific chaperone 1
See related
EnsemblRapid:ENSSNMG00000026370
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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See c1galt1c1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 17 NC_052323.1 (2609891..2612978, complement)

Chromosome 17 - NC_052323.1Genomic Context describing neighboring genes Neighboring gene cullin 4B Neighboring gene MCTS1 re-initiation and release factor Neighboring gene urotensin-related peptide 1 Neighboring gene chloride intracellular channel 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052323.1 Chromosome 17 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052323.1 Reference SaNama_1.0 Primary Assembly

    Range
    2609891..2612978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039012043.1 → XP_038867971.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A8U1F1D1
    Related
    ENSSNMP00000036685.1, ENSSNMT00000041173.1
Nucleotide Protein
Heading Accession and Version

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