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LOC120061690 host cell factor 1-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120061690, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120061690
Gene description
host cell factor 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120061690 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 16 NC_052322.1 (42706795..42758335, complement)

Chromosome 16 - NC_052322.1Genomic Context describing neighboring genes Neighboring gene aerolysin-like protein Neighboring gene sodium-dependent neutral amino acid transporter SLC6A17-like Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene methyl-CpG-binding protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052322.1 Chromosome 16 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052322.1 Reference SaNama_1.0 Primary Assembly

    Range
    42706795..42758335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039011584.1 → XP_038867512.1  host cell factor 1-like

    UniProtKB/TrEMBL
    A0A8U1H303
    Conserved Domains (4) summary
    PLN02153
    Location:7 → 321
    PLN02153; epithiospecifier protein
    sd00038
    Location:192 → 241
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:363 → 729
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:307 → 339
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases