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hcfc1b host cell factor C1b [ Salvelinus namaycush (lake trout) ]

Gene ID: 120059564, updated on 21-Mar-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: 14
Exon count:
25
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 14 NC_052320.1 (4841816..4902312)

Chromosome 14 - NC_052320.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding protein 2-like Neighboring gene uncharacterized LOC120058784 Neighboring gene cyclin-dependent kinase 20 Neighboring gene histone deacetylase 6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052320.1 Chromosome 14 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052320.1 Reference SaNama_1.0 Primary Assembly

    Range
    4841816..4902312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039008697.1 → XP_038864625.1  host cell factor 1b

    UniProtKB/TrEMBL
    A0A8U1BVY3
    Conserved Domains (5) summary
    TIGR01645
    Location:1386 → 1529
    half-pint; poly-U binding splicing factor, half-pint family
    PLN02193
    Location:22 → 317
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1571 → 1601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:195 → 248
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:370 → 694
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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