U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120057345 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120057345, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120057345
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like
See related
EnsemblRapid:ENSSNMG00000032630
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120057345 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 12 NC_052318.1 (46793813..46898540, complement)

Chromosome 12 - NC_052318.1Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein-like Neighboring gene 40S ribosomal protein S14 Neighboring gene pre-mRNA-splicing factor RBM22-like Neighboring gene ADP-ribosylation factor-like protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_052318.1 Chromosome 12 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052318.1 Reference SaNama_1.0 Primary Assembly

    Range
    46793813..46898540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039005928.1 → XP_038861856.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A8U1EV16
    Related
    ENSSNMP00000046502.1, ENSSNMT00000051312.1
    Conserved Domains (2) summary
    pfam00685
    Location:618 → 868
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:32 → 528
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases