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LOC120056295 aspartyl/asparaginyl beta-hydroxylase-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120056295, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120056295
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:ENSSNMG00000004841
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120056295 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 11 NC_052317.1 (13664351..13683667)

Chromosome 11 - NC_052317.1Genomic Context describing neighboring genes Neighboring gene alpha-tocopherol transfer protein-like Neighboring gene U6 spliceosomal RNA Neighboring gene UPF0329 protein ECU05_1680/ECU11_0050-like Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene ras-related protein Rab-2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052317.1 Chromosome 11 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052317.1 Reference SaNama_1.0 Primary Assembly

    Range
    13664351..13683667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039004537.1 → XP_038860465.1  aspartyl/asparaginyl beta-hydroxylase-like

    UniProtKB/TrEMBL
    A0A8U1C454
    Related
    ENSSNMP00000006894.1, ENSSNMT00000007534.1
    Conserved Domains (1) summary
    pfam05279
    Location:32 → 105
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
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