U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120055085 torsin-1A-interacting protein 2-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120055085, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120055085
Gene description
torsin-1A-interacting protein 2-like
See related
EnsemblRapid:ENSSNMG00000031118
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120055085 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 10 NC_052316.1 (45153988..45158207, complement)

Chromosome 10 - NC_052316.1Genomic Context describing neighboring genes Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae) Neighboring gene uncharacterized LOC120055083 Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene olfactomedin-like 2Ba

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_052316.1 Chromosome 10 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
torsin-1A-interacting protein 1-like; torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052316.1 Reference SaNama_1.0 Primary Assembly

    Range
    45153988..45158207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039002979.1 → XP_038858907.1  torsin-1A-interacting protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8U1BT32
    Conserved Domains (1) summary
    pfam05609
    Location:323 → 528
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_039002980.1 → XP_038858908.1  torsin-1A-interacting protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8U1BZ87
    Conserved Domains (1) summary
    pfam05609
    Location:319 → 524
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_039002981.1 → XP_038858909.1  torsin-1A-interacting protein 1-like isoform X4

    UniProtKB/TrEMBL
    A0A8U1EHY9
    Related
    ENSSNMP00000044172.1, ENSSNMT00000048914.1
    Conserved Domains (1) summary
    pfam05609
    Location:307 → 512
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_039002978.1 → XP_038858906.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8U1BKF2
    Related
    ENSSNMP00000044163.1, ENSSNMT00000048906.1
    Conserved Domains (1) summary
    pfam05609
    Location:324 → 529
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases