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LOC120049185 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120049185, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120049185
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120049185 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 6 NC_052312.1 (52495859..52507856, complement)

Chromosome 6 - NC_052312.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 178Bb Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like Neighboring gene mitochondrial ribosomal protein S33 Neighboring gene B-Raf proto-oncogene, serine/threonine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052312.1 Chromosome 6 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052312.1 Reference SaNama_1.0 Primary Assembly

    Range
    52495859..52507856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038995413.1 → XP_038851341.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8U0UGW8
    Conserved Domains (1) summary
    cd02515
    Location:166 → 436
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens
Nucleotide Protein
Heading Accession and Version

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