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LOC120042180 acetylcholine receptor subunit alpha-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120042180, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120042180
Gene description
acetylcholine receptor subunit alpha-like
See related
EnsemblRapid:ENSSNMG00000006453
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120042180 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) Unplaced Scaffold NW_024061341.1 (82188..100059, complement)

NW_024061341.1Genomic Context describing neighboring genes Neighboring gene integral membrane protein GPR155-like Neighboring gene WAS/WASL-interacting protein family member 1-like Neighboring gene kelch-like protein 23 Neighboring gene pyridoxal phosphate phosphatase PHOSPHO2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024061341 Unplaced Scaffold Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NW_024061341.1 Reference SaNama_1.0 Primary Assembly

    Range
    82188..100059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038987051.1 → XP_038842979.1  acetylcholine receptor subunit alpha-like

    UniProtKB/TrEMBL
    A0A8U0R2N0
    Related
    ENSSNMP00000009152.1, ENSSNMT00000010075.1
    Conserved Domains (2) summary
    TIGR00860
    Location:1 → 450
    LIC; Cation transporter family protein
    cd19014
    Location:25 → 234
    LGIC_ECD_nAChR_A1; extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)
Nucleotide Protein
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