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LOC120028841 gamma-sarcoglycan-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120028841, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120028841
Gene description
gamma-sarcoglycan-like
See related
EnsemblRapid:ENSSNMG00000038199
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120028841 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
7
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 34 NC_052340.1 (24768482..24776521, complement)

Chromosome 34 - NC_052340.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 19-like Neighboring gene sacsin-like Neighboring gene 40S ribosomal protein S25-like Neighboring gene trafficking protein particle complex 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052340.1 Chromosome 34 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052340.1 Reference SaNama_1.0 Primary Assembly

    Range
    24768482..24776521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038974086.1 → XP_038830014.1  gamma-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A8U0PUG9
    Related
    ENSSNMP00000055396.1, ENSSNMT00000060497.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases