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csgalnact2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Salvelinus namaycush (lake trout) ]

Gene ID: 120017519, updated on 21-Mar-2024

Summary

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Gene symbol
csgalnact2
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:ENSSNMG00000008718
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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See csgalnact2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
8
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 22 NC_052328.1 (8646028..8657573, complement)

Chromosome 22 - NC_052328.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex binding protein Neighboring gene SEC23 interacting protein Neighboring gene ret proto-oncogene receptor tyrosine kinase Neighboring gene uncharacterized LOC120017385

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052328.1 Chromosome 22 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052328.1 Reference SaNama_1.0 Primary Assembly

    Range
    8646028..8657573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038960331.1 → XP_038816259.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8U0THW4
    Conserved Domains (1) summary
    cl11394
    Location:75 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_038960330.1 → XP_038816258.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8U0THW4
    Conserved Domains (1) summary
    cl11394
    Location:75 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_038960329.1 → XP_038816257.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8U0THW4
    Related
    ENSSNMP00000011801.1, ENSSNMT00000013315.1
    Conserved Domains (1) summary
    cl11394
    Location:75 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_038960328.1 → XP_038816256.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8U0THW4
    Conserved Domains (1) summary
    cl11394
    Location:75 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_038960327.1 → XP_038816255.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8U0THW4
    Conserved Domains (1) summary
    cl11394
    Location:75 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_038960332.1 → XP_038816260.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8U0THJ9
    Related
    ENSSNMP00000011786.1, ENSSNMT00000013301.1
    Conserved Domains (1) summary
    cl11394
    Location:75 → 406
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_038960333.1 → XP_038816261.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A8U0P1N7
    Related
    ENSSNMP00000011780.1, ENSSNMT00000013295.1
    Conserved Domains (1) summary
    cl11394
    Location:75 → 386
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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