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rpap2 RNA polymerase II associated protein 2 [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119964405, updated on 21-Mar-2024

Summary

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Gene symbol
rpap2
Gene description
RNA polymerase II associated protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
Orthologs
human zebrafish all
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Genomic context

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See rpap2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 4 NC_052149.1 (21551011..21666146)

Chromosome 4 - NC_052149.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf146 homolog Neighboring gene glomulin, FKBP associated protein a Neighboring gene growth factor independent 1A transcription repressor a Neighboring gene ecotropic viral integration site 5a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052149.1 Chromosome 4 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase core enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative RNA polymerase II subunit B1 CTD phosphatase rpap2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052149.1 Reference sScyCan1.1 Primary Assembly

    Range
    21551011..21666146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038793824.1 → XP_038649752.1  putative RNA polymerase II subunit B1 CTD phosphatase rpap2 isoform X3

    Conserved Domains (1) summary
    pfam04181
    Location:86 → 158
    RPAP2_Rtr1; Rtr1/RPAP2 family

  2. XM_038793823.1 → XP_038649751.1  putative RNA polymerase II subunit B1 CTD phosphatase rpap2 isoform X2

    Conserved Domains (1) summary
    pfam04181
    Location:86 → 158
    RPAP2_Rtr1; Rtr1/RPAP2 family

  3. XM_038793822.1 → XP_038649750.1  putative RNA polymerase II subunit B1 CTD phosphatase rpap2 isoform X1

    Conserved Domains (1) summary
    pfam04181
    Location:86 → 158
    RPAP2_Rtr1; Rtr1/RPAP2 family

RNA

  1. XR_005460292.1 RNA Sequence

  2. XR_005460293.1 RNA Sequence

Nucleotide Protein
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