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LOC119917236 galactose-3-O-sulfotransferase 2 [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119917236, updated on 21-Mar-2024

Summary

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Gene symbol
LOC119917236
Gene description
galactose-3-O-sulfotransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
zebrafish all
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Genomic context

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See LOC119917236 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024040041.1 (8252898..8255958, complement)

NW_024040041.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated serine/threonine-protein kinase 1-like Neighboring gene uncharacterized LOC119883416 Neighboring gene cysteine protease ATG4D-like Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4a Neighboring gene uncharacterized LOC119883492 Neighboring gene low density lipoprotein receptor a Neighboring gene Z30 small nucleolar RNA Neighboring gene KRI1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024040041 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactose-3-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024040041.1 Reference ASM1485139v1 Primary Assembly

    Range
    8252898..8255958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038737453.1 → XP_038593381.1  galactose-3-O-sulfotransferase 2

    Conserved Domains (1) summary
    cl22970
    Location:99 → 433
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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