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chpfa chondroitin polymerizing factor a [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119903915, updated on 21-Mar-2024

Summary

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Gene symbol
chpfa
Gene description
chondroitin polymerizing factor a
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
zebrafish all
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Genomic context

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See chpfa in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024040596.1 (8906678..8915291, complement)

NW_024040596.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 142-like Neighboring gene acid-sensing ion channel 4-A-like Neighboring gene pyridoxal kinase-like Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024040596 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024040596.1 Reference ASM1485139v1 Primary Assembly

    Range
    8906678..8915291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038720216.1 → XP_038576144.1  chondroitin sulfate synthase 2

    Conserved Domains (2) summary
    pfam05679
    Location:252 → 753
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:178 → 272
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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