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sft2d3 SFT2 domain containing 3 [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119902798, updated on 21-Mar-2024

Summary

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Gene symbol
sft2d3
Gene description
SFT2 domain containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
human zebrafish all
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Genomic context

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See sft2d3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024040485.1 (33849220..33850352, complement)

NW_024040485.1Genomic Context describing neighboring genes Neighboring gene nuclear factor 7, brain-like Neighboring gene WD repeat domain 33 Neighboring gene dual specificity protein phosphatase 18-like Neighboring gene tripartite motif-containing protein 35-like Neighboring gene vesicle transport protein SFT2C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024040485 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus). Li C, et al. Mol Ecol Resour, 2015 Mar. PMID 25047482
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport protein SFT2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024040485.1 Reference ASM1485139v1 Primary Assembly

    Range
    33849220..33850352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038719170.1 → XP_038575098.1  vesicle transport protein SFT2C

    Conserved Domains (1) summary
    pfam04178
    Location:121 → 211
    Got1; Got1/Sft2-like family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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