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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119898303, updated on 21-Mar-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024040152.1 (19703225..19735631)

NW_024040152.1Genomic Context describing neighboring genes Neighboring gene FXYD domain containing ion transport regulator 5 Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene amyloid beta (A4) precursor-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024040152 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus). Li C, et al. Mol Ecol Resour, 2015 Mar. PMID 25047482
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kirre like nephrin family adhesion molecule 3, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024040152.1 Reference ASM1485139v1 Primary Assembly

    Range
    19703225..19735631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038712496.1 → XP_038568424.1  kirre like nephrin family adhesion molecule 3, like isoform X1

    Conserved Domains (4) summary
    pfam13927
    Location:220 → 289
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  2. XM_038712498.1 → XP_038568426.1  kirre like nephrin family adhesion molecule 3, like isoform X3

    Conserved Domains (4) summary
    pfam13927
    Location:220 → 289
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  3. XM_038712497.1 → XP_038568425.1  kirre like nephrin family adhesion molecule 3, like isoform X2

    Conserved Domains (4) summary
    pfam13927
    Location:219 → 288
    Ig_3; Immunoglobulin domain
    cd00096
    Location:389 → 393
    Ig; Ig strand A [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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