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rnf14 ring finger protein 14 [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119895603, updated on 21-Mar-2024

Summary

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Gene symbol
rnf14
Gene description
ring finger protein 14
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
human zebrafish all
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Genomic context

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See rnf14 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024044681.1 (17953542..17959160)

NW_024044681.1Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 10 Neighboring gene heat shock protein 4a Neighboring gene endonuclease, polyU-specific 2 Neighboring gene NEDD4 family-interacting protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024044681 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus). Li C, et al. Mol Ecol Resour, 2015 Mar. PMID 25047482
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024044681.1 Reference ASM1485139v1 Primary Assembly

    Range
    17953542..17959160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038708827.1 → XP_038564755.1  E3 ubiquitin-protein ligase RNF14

    Conserved Domains (4) summary
    smart00647
    Location:297 → 358
    IBR; In Between Ring fingers
    cd16628
    Location:226 → 278
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins
    pfam01485
    Location:385 → 443
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:6 → 125
    RWD; RWD domain

  2. XM_038708828.1 → XP_038564756.1  E3 ubiquitin-protein ligase RNF14

    Conserved Domains (4) summary
    smart00647
    Location:297 → 358
    IBR; In Between Ring fingers
    cd16628
    Location:226 → 278
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins
    pfam01485
    Location:385 → 443
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:6 → 125
    RWD; RWD domain

  3. XM_038708826.1 → XP_038564754.1  E3 ubiquitin-protein ligase RNF14

    Conserved Domains (4) summary
    smart00647
    Location:297 → 358
    IBR; In Between Ring fingers
    cd16628
    Location:226 → 278
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins
    pfam01485
    Location:385 → 443
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:6 → 125
    RWD; RWD domain
Nucleotide Protein
Heading Accession and Version

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