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LOC119895086 aspartyl/asparaginyl beta-hydroxylase-like [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119895086, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119895086
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
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Genomic context

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See LOC119895086 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024040040.1 (51078844..51120465, complement)

NW_024040040.1Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene uncharacterized abhydrolase domain-containing protein DDB_G0269086-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024040040 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024040040.1 Reference ASM1485139v1 Primary Assembly

    Range
    51078844..51120465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038708286.1 → XP_038564214.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:52 → 313
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:346 → 506
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:421 → 447
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:590 → 744
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_038708043.1 → XP_038563971.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:116 → 365
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:398 → 558
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:473 → 499
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:642 → 796
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_038707955.1 → XP_038563883.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:116 → 377
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:410 → 570
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:485 → 511
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:654 → 808
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_038708202.1 → XP_038564130.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    Conserved Domains (4) summary
    pfam05279
    Location:94 → 355
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:388 → 548
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:463 → 489
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:632 → 786
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_038708119.1 → XP_038564047.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:116 → 362
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:395 → 555
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:470 → 496
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:639 → 793
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
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